How to Secure Your Web Application With the Right Practices

Last Updated: 

February 6, 2026

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Web application security is a critical aspect of any business. Without proper security measures in place, your data and systems are at risk of being compromised by malicious actors. In this article, we’ll discuss some of the most important practices you can use to secure your web application

Key Takeaways on Securing Your Web Application

  1. Understand Common Threats: Familiarise yourself with prevalent attacks like session hijacking, cross-site scripting (XSS), and SQL injection to build a targeted defence.
  2. Encrypt Your Data: Protect sensitive information both at rest with full-disk encryption and for specific files using file-level encryption to prevent unauthorised access.
  3. Inspect All Traffic: Implement tools like Web Application Firewalls (WAFs) to monitor and block malicious requests before they reach your application.
  4. Enforce Strong Password Policies: Secure user accounts by requiring complex, regularly updated passwords and using secure storage mechanisms.
  5. Validate and Encode User Input: Prevent injection attacks by always validating the type and content of user-submitted data and encoding it properly.
  6. Manage Sessions Securely: Use encrypted, tamper-proof session cookies and enforce session timeouts to stop attackers from hijacking user sessions.
  7. Secure Data in Transit: Employ SSL/TLS certificates (HTTPS) to encrypt all data exchanged between your server and users' browsers, protecting it from eavesdropping.
  8. Protect External Interfaces: Secure all access points, including APIs and admin panels, with firewalls and robust authentication measures.
  9. Conduct Regular Security Testing: Proactively identify and fix vulnerabilities in your application through a combination of manual and automated security testing.
  10. Train Users and Audit Systems: Educate your team on security best practices and perform regular security assessments to ensure your protective measures are effective.
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First, it’s important to understand the different types of attacks that your website may encounter. The OWASP organisation provides a comprehensive list of all the different types of attacks, but we’ll mention some specific ones here:

  • Session hijacking - An attacker obtains access to an authenticated user’s session identifier and uses it to impersonate the victim and perform transactions on their account.
  • Cross-site scripting (XSS) - An attacker injects malicious code into a web page, which is then executed by unsuspecting users who visit the page. This can be used to steal user data or to take over their session.
  • SQL injection - An attacker injects SQL commands into a web application in order to gain access to sensitive data or execute malicious actions.

Once you understand the different types of attacks that your application may be vulnerable to, you can start implementing security measures to protect against them. The following are some of the 10 most important practices to adopt:

1. Data Encryption

Data encryption is all about protecting your most valuable data against attackers. Without encryption, unauthorised users can gain access to sensitive information by stealing it directly from storage devices.

There are two types of encryption methods you can use:

The most common type is full-disk encryption (FDE), where all data is encrypted at rest. This is a good option if you want to protect data from unauthorised access, even if the device is stolen.

Another option is file-level encryption, where specific files or folders are encrypted. This is a good option if you want to encrypt sensitive data that’s stored in the cloud or on removable storage devices.

2. Inspection of all traffic

In order to protect your web application from attack, you need to be able to identify and block malicious traffic. This can be done by inspecting all traffic that comes into and out of your web server.

There are a number of different methods you can use for inspection, including:

  • Network intrusion detection systems (NIDS) can be used to inspect network traffic.

Web application firewalls (WAFs) can be used to block malicious requests based on their content. WAFs are an additional layer of security that sits between your web server and the open internet. They work by inspecting all traffic that comes into and out of your web server and blocking any requests that match a predefined set of rules.

3. Password Management

One of the most common ways for attackers to gain access to your systems is by stealing user passwords. This can be done by exploiting vulnerabilities in your application or by obtaining passwords through social engineering attacks.

The best way to mitigate this risk is with a strong password policy. In addition to using long and complex passwords, here are some best practices for creating your password management system:

  • Use a secure password storage mechanism - Most programming languages provide built-in methods for storing user passwords in a secure manner. You can also use third-party libraries or SDKs that provide more robust password storage functionality.
  • Make sure passwords are updated regularly - Passwords that haven’t been changed in a while are much more likely to be compromised, so you should force users to update their passwords every few months.

4. Input Validation and Encoding

Input validation and encoding are another important step for securing your web application against attack. This includes validating that:

  • User-provided data matches the expected type (e.g., email addresses and phone numbers)
  • Data entered by users doesn’t contain any malicious code (e.g., SQL injection and cross-site scripting)
  • Data is properly encoded to prevent XSS attacks

Input validation is typically performed using regular expressions, but it can be done using a higher-level language as well (e.g., Java or C#).

5. Secure Session Management

One of the most common ways for attackers to gain access to your systems is by stealing session cookies. This can be done by exploiting vulnerabilities in your application, or by obtaining cookies through social engineering attacks.

The best way to mitigate this risk is with a strong session management system. This includes using cookies that are encrypted and tamper-proof, and requiring users to log in again after a certain amount of time has elapsed.

6. Secure Data Transmission

In order to protect your data while it’s being transmitted, you need to use secure transmission protocols. The most common secure transmission protocols are SSL/TLS and HTTPS.

An SSL/TLS certificate encrypts all of the data that flows between your web server and users’ web browsers. This prevents attackers from accessing any of this sensitive traffic.

7. External Interface Protection

Your application likely has multiple external interfaces, including the following:

  • Web application interface
  • API or microservices interface
  • User interface for management or administration purposes

Each of these interfaces should be protected with appropriate security measures. This includes using firewalls to restrict access to only authorised users and using proper authentication and authorisation mechanisms.

8. Security Testing

Security testing is an essential part of protecting your web application from attack. It includes identifying and exploiting vulnerabilities in your application and then developing countermeasures to protect against them.

Security testing can be performed manually or using automated tools. Automated tools are generally faster and more accurate, but they can also be more expensive.

9. Security Awareness Training

One of the most important, but often overlooked, security measures is security awareness training. This includes educating users on common types of attacks and teaching them how to avoid these attacks.

To make your security training more effective, you should periodically test employees’ knowledge about security best practices. The results of this testing can be used to guide future security awareness campaigns.

10. Security Assessments & Audits

Security assessments are performed by security professionals to identify vulnerabilities in your web application. Security audits are a subset of security assessments and are performed specifically to determine whether your security controls are effective.

Both security assessments and audits should be performed on a regular basis, preferably at least once a year.

Wrapping up

The right approach for securing your web application is to adopt a defense-in-depth strategy. This involves using multiple layers of security that cover different steps in the attack continuum.

In addition, security needs to be an ongoing process where new techniques, tactics, and procedures are constantly being implemented to stay ahead of attackers’ methods.

FAQs for How to Secure Your Web Application With the Right Practices

What are the first steps to securing a web application?

Your first step is to understand the common threats you face, such as SQL injection and cross-site scripting (XSS). Once you know the risks, you can begin implementing foundational security layers like data encryption, strong password policies, and a Web Application Firewall (WAF).

Why is user input validation so critical?

User input is a primary way attackers introduce malicious code into a system. By validating all input, you ensure that the data is in the expected format and contains no harmful scripts or commands, which directly prevents attacks like XSS and SQL injection.

What is the difference between a security assessment and a security audit?

A security assessment is a broad process where security professionals actively search for vulnerabilities in your application. A security audit is more specific; it's a systematic check to verify that your existing security controls are in place, effective, and compliant with established policies.

How does HTTPS improve web application security?

HTTPS uses SSL/TLS to encrypt the data transmitted between a user's browser and your web server. This encryption prevents attackers from intercepting and reading sensitive information like login credentials, personal details, or payment information while it's in transit.

Is a strong password policy enough to protect user accounts?

While a strong password policy is essential, it's just one part of a complete strategy. You should also use secure, encrypted storage for passwords, implement secure session management with timeouts, and consider multi-factor authentication for an additional layer of protection.

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